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I will say this, though. I have to agree about the Pendent staying behind. What the hell was up with that? Very inexplicable.
Well, earlier in the thread a hypothesis has been proposed that the Pendant might have a soul. If there's any weight to that, it may have stayed behind on purpose so that Crono would use it to save Marle.
This is very explainable, and maybe I didn't do a good enough job explaining it before. We can infer that the pendant came loose from Marle as she was being drawn into the gate by the fact that Lucca told Crono to hold onto the pendant (inference: she didn't want him to let it loose) in this quote:
Lucca: This is our only hope!
That pendant seems to be the key, so
hang on to it Crono, and brace
yourself!
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Why did Lavos not send Schala off to another time period like he did Janus and the Gurus?
Who said he gated everyone else on purpose?
It sure looked like he did. After all, Lavos is a being that can transcend time, can affect an entire planet's evolutionary process (see quotes from "The Final Battle" if you don't believe me), can control nearly and entire civilization, and can create space-time distortions. Lavos was obviously in control of what happened in his pocket dimension during the Ocean Palace disaster in the original timeline.
For all we know, the Mammon Machine could have overloaded it, and the energy leaked out and formed gates.
Except in Magus' flashback you see Lavos' head actually doing something and then the gate forming. Furthermore, we have quotes from both the Guru of Reason and Magus supporting that Lavos created the gates during the Ocean Palace disaster.
My reasoning is simple: What can an old man do? He is frail, what? Is he just going to go back to Zeal, and stop the Queen? Him and what army. He'd probably be banished or killed or something. They may think he's an imposter, especially if he arrived as a Nu. And he would have wasted the invention for nothing.
That's definitely good reasoning for why he couldn't return to Zeal, but he could have easily found another time period to live in by using his invention - anything between the end of the ice age and 1000 A.D. (and probably even past 1000 A.D, but not too close to the Day of Lavos) would be better than continuing life in 2300 A.D.