Those would be expected, but I think there were other changes that didn't had to do with the controllers.
Like, from the Discord chat:
Magus08/27/2018
:<
Frog: Are you Mad!!??!
Magus: I said he was dead. I didn't say it couldn't be undone.
...I think this is its own translation
I don't think this was the DS game's translation
how's this
AcaciaSgt08/27/2018
Hmm, looking up the script, it does seem to be different.
Magus: I said the fool was dead. I did not say his death could not be undone.
He also brought up that Queen Leene no longer mentions the leading party member after finding the Rainbow Shell. A picture was even uploaded, but I can't find it.
Anyway, I have an on-going playthrough of the Steam version in NG+ (I'm getting those ending achievements, as it were), so I can check out both cases if it's truly different from the DS script. Finding the DS script isn't hard when there's lots of video and picture LP's out there.
Meanwhile, it's kinda hard to find playthroughs of the Mobile/PC version. Most I found stopped before reaching those points.