Branching over it plus a couple other changes got it working.
CCE602-CCE63A:
$CC/E602 80 11 BRA $11 [$E615]
$CC/E604 EA NOP
$CC/E605 EA NOP
$CC/E606 EA NOP
$CC/E607 EA NOP
$CC/E608 EA NOP
$CC/E609 EA NOP
$CC/E60A EA NOP
$CC/E60B EA NOP
$CC/E60C EA NOP
$CC/E60D EA NOP
$CC/E60E EA NOP
$CC/E60F EA NOP
$CC/E610 EA NOP
$CC/E611 EA NOP
$CC/E612 EA NOP
$CC/E613 EA NOP
$CC/E614 EA NOP
$CC/E615 AA TAX
$CC/E616 BF 46 F8 CC LDA $CCF846,x[$CC:F846]
$CC/E61A C2 20 REP #$20
$CC/E61C 18 CLC
$CC/E61D 69 23 2C ADC #$2C23
$CC/E620 AA TAX
$CC/E621 A5 82 LDA $82 [$00:0082]
$CC/E623 29 FF 00 AND #$00FF
$CC/E626 18 CLC
$CC/E627 69 00 94 ADC #$9400
$CC/E62A A8 TAY
$CC/E62B A9 05 00 LDA #$0005
$CC/E62E 54 7E 7E MVN 7E 7E
$CC/E631 29 FF 00 AND #$00FF
$CC/E634 E2 20 SEP #$20
$CC/E636 80 03 BRA $03 [$E63B]
$CC/E638 EA NOP
$CC/E639 EA NOP
$CC/E63A EA NOP
This works everywhere now, and should have no incompatibilities with other code, as everything replaced the existing areas.
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