Wow! I missed all of this. I guess that's what happens when I get out of the loop. I can't say I'm surprised. There were a number of people who had access to the ROM during the later stages of development, and a smaller number (although still several) who had the Temporal Flux chops to finish things off, which would account for the post-98% version being leaked. I'm sad I don't have the inside scoop this time. When the original C&D came around, I knew everything that was going on. Now, I'm left to wonder like the rest of you.
A couple of notes:
1) The Chrono Compendium doesn't have anything to worry about. SE used up its leverage over this place back with the original C&D demand. We're out of the business of releasing unauthorized ROMs, and that is that. If SE wanted to take further action against our community, they'd have to sue, and now their case would be even flimsier than it would have been in 2009. It doesn't make sense for SE to sue people who don't have anything that it values.
2) I never knew about "Flames of Eternity." I would offer advice to the CE development team to be flattered, not offended. They ripped you off. That's how fans show their love. You ripped off the Dream Team. Don't you suppose Mr. Kato himself would be disappointed at CE in that it almost certainly doesn't match his own vision for the series? Now, you're on the other end of the stick. You're the ones who got ripped off. Take it as a compliment. And if the hacked hack is inferior to the original hack--which it almost certainly is, because CE is a surprisingly good game--then so much the better.