Totally ripping off DC, how about "Anti-Matter Universe"?
Think about it: In the beginning, the world was in ruins. Then, Lavos fell upon the planet and rejuvenated it with life and peace. But three Villains of Time, finding all the flowers and hugging and celebrations to be absolutely disgusting, travel through time to make enemies with a talking frog who killed his best friend, a Robo corrupted by a virus and bent on destroying Mother Brain (who was tasked to "benefit humanity"), and a stone age lass who went on a murderous xenophobic rampage. In the Dark Ages, the Mystics / Fiendkind rebel against humanity with "love", not hatred, in order to help liberate themselves from slavery -- and this is where Magus comes in, the benevolent prophet and magician who dreams to "win" against his fate non-violently.
The only solution in this convoluted universe? The Blue Mohawk-haired Crono plans to destroy Lavos, the benefactor of the world, and "set things right" by watching people die.